Developing scientific software that powers AI-native drug discovery at Lilly. Collaborating with scientists to translate needs into prototypes and workflows.
Responsibilities
Design, build, and maintain data processing pipelines for complex scientific datasets
Develop RESTful APIs and microservices providing unified programmatic access to LIMS, ELNs, instruments, data warehouses and analytical databases
Support continuous improvement of LIMS and adjacent systems to meet evolving scientific workflows, security, and scalability standards
Work directly with bench scientists to understand pain points and rapidly prototype custom applications, dashboards, and workflow tools
Validate prototypes through iterative scientist feedback, ensuring solutions are fit-for-purpose before transition
Build integrations connecting lab automation equipment, scheduling systems, and instrument data streams to Data Foundry’s infrastructure
Develop software for robotic workflow control, instrument driver interfaces, and real-time data capture from automated platforms
Create modular, reusable automation workflow components scientists can configure without writing code
Build and operate cloud-native components supporting containerized workflows
Apply DevSecOps standards including security scanning, code review, and automated testing
Requirements
B.S. or M.S. in Computer Science, Bioinformatics, Cheminformatics, Computational Biology, Chemistry, Biology, Biomedical Engineering, or related STEM field
Bachelor with 3+ years and Master with 1+ years of scientific software development, with understanding of experimental data types and scientific workflows
Proficiency in Python and at least one additional language (Java, C#, Go, or TypeScript)
SQL skills appropriate to level
Experience (or demonstrated aptitude at junior levels) building RESTful APIs, data pipelines, and/or microservices for scientific or technical applications
Familiarity with cloud platforms (AWS, Azure, or GCP), containerization (Docker/Kubernetes), and Git
Strong communication skills and interest to collaborate with scientists and multi-functional teams
Pharmaceutical or biotech research industry experience, particularly in discovery workflows for biology, chemistry, or automation
LIMS/ELN experience (e.g., Benchling) and laboratory instrument integration
Experience integrating lab automation systems with digital platforms, including instrument control, robotic workflow orchestration, or scheduling systems (OPC-UA, serial/USB protocols, automation scheduling platforms)
Data warehousing experience (Postgres, Redshift, BigQuery, Snowflake) and scientific data standards/ontologies
Hands-on experience with cheminformatics tools (RDKit, Schrödinger, MOE) or bioinformatics platforms (Biopython, Bioconductor, sequence analysis pipelines)
Experience with scientific computing libraries (SciPy, NumPy) for numerical methods, ODE solvers, optimization, or PK/PD modeling workflows
Workflow orchestration (Prefect, Airflow, Nextflow, WDL) and CI/CD practices
Strong learning agility—willingness to step outside comfort zone and adopt new technologies to get the job done
Experience with C, C++, or other compiled languages for porting performance-critical scientific workflows; ability to profile and identify computational bottlenecks
Benefits
Comprehensive benefit program
Eligibility for medical, dental, vision and prescription drug benefits
Eligibility to participate in a company-sponsored 401(k)
Pension
Vacation benefits
Flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts)
Life insurance and death benefits
Certain time off and leave of absence benefits
Well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities)
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